Is Nickel Driving the Bacterial Community Diversity in the Rhizosphere of Hyperaccumulator Plants?

Ultramafic soils display high concentrations of nickel (Ni) and a number of nutrient deficiencies (e.g. N, K, P). Ni-hyperaccumulator plants have evolved on such environments, developed specific metal homeostasis showing concentrations of Ni sometimes above 1% in their aerial biomass (Baker & Brooks 1989). Alyssum murale, a Ni-hyperaccumulator, is commonly found around the Mediterranean but can grow on non-ultramafic soils as well, with an altitudinal extension ranging from sea level to 2000 m.a.s.l. Rhizosphere bacterial communities associated with Ni-hyperaccumulator plants can differ from those of non-accumulating plants growing at the same site. Among edaphic factors that could influence the phylogenetic structure of the bacterial communities, altitude and metal-bioavailability and in particular nickel could be significant. However, most studies have focused on analyzing soils with techniques that provide little detail about the phylogenetic structure of these bacterial communities present in ultramafic soils. The objectives of this study were to understand the specific changes in the structure of A. murale rhizosphere bacterial community that occur across two gradients: 1°) elevation and 2°) Ni geochemistry, using pyrosequencing technique (454-pyrosequencing of 16S rRNA gene). It was found that the higher the soil chemically-available Ni contents, the higher the relative abundance of Proteobacteria and Actinobacteria. On the contrary, the abundance of TM7 decreased with increasing levels of available Ni. Moreover, Chloroflexi was present with 53 to 77% of relative abundance. These results demonstrate that soil chemically-available Ni drives the bacterial community diversity in the rhizosphere of Alyssum murale regardless the elevation gradient and other different soil physicochemical parameters. These results should now be confirmed in different ultramafic edaphic environments worldwide (e.g. ultramafic lateritic covers) and in the rhizosphere of different hyperaccumulator taxa.